Variant report

Variant	rs2028015
Chromosome Location	chr7:18911061-18911062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10237149	1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs10237280	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs10237366	1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs10486314	0.90[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs11761877	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12536081	0.91[ASN][1000 genomes]
rs12699994	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.88[ASN][1000 genomes]
rs12699999	0.90[ASN][1000 genomes]
rs12700000	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700003	0.81[GIH][hapmap]
rs13233322	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs13239638	0.83[MKK][hapmap]
rs13242358	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17349860	0.82[GIH][hapmap]
rs2016515	0.87[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs2073963	0.80[GIH][hapmap]
rs2286213	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs55761404	0.90[ASN][1000 genomes]
rs6461387	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs6461389	0.87[GIH][hapmap];0.80[MEX][hapmap]
rs6461394	0.89[GIH][hapmap]
rs67248060	0.90[ASN][1000 genomes]
rs6951522	0.84[GIH][hapmap]
rs6951745	0.93[GIH][hapmap]
rs6973029	0.81[CEU][hapmap]
rs7794241	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7801037	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18906200-18929200	Weak transcription	Left Ventricle	heart
3	chr7:18908000-18913800	Weak transcription	NHDF-Ad	bronchial

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