Variant report

Variant	rs17349860
Chromosome Location	chr7:18868031-18868032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10230371	0.80[MEX][hapmap]
rs10237149	0.87[GIH][hapmap];0.80[MEX][hapmap]
rs10237280	0.85[GIH][hapmap];0.80[MEX][hapmap]
rs10237366	0.82[GIH][hapmap]
rs10486314	0.85[GIH][hapmap];0.84[MEX][hapmap]
rs12540774	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12699994	0.80[GIH][hapmap];0.86[TSI][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs12700003	0.85[GIH][hapmap]
rs13238389	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13245206	0.82[GIH][hapmap]
rs2016515	0.85[CEU][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2028015	0.82[GIH][hapmap]
rs2073963	0.89[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs2073964	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3852256	0.85[CEU][hapmap];0.82[GIH][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3852257	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6461385	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6461386	0.91[GIH][hapmap];0.87[MEX][hapmap]
rs6461387	0.82[GIH][hapmap];0.80[MEX][hapmap]
rs6461389	0.82[GIH][hapmap]
rs6461394	0.84[GIH][hapmap]
rs6951522	0.95[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6951745	0.80[GIH][hapmap]
rs7795433	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs957960	0.91[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18854000-18874400	Weak transcription	Aorta	Aorta
2	chr7:18866200-18869000	Weak transcription	Osteobl	bone
3	chr7:18866800-18885200	Weak transcription	Primary B cells from cord blood	blood
4	chr7:18867200-18882400	Weak transcription	Left Ventricle	heart
5	chr7:18867800-18870000	Enhancers	HSMM	muscle
6	chr7:18868000-18868200	Enhancers	HSMMtube	muscle
7	chr7:18868000-18868400	Enhancers	NHDF-Ad	bronchial
8	chr7:18868000-18868600	Enhancers	Adipose Nuclei	Adipose
9	chr7:18868000-18869000	Enhancers	Fetal Muscle Leg	muscle
10	chr7:18868000-18869400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:18868000-18869600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr7:18868000-18870000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links