Variant report

Variant	rs6951522
Chromosome Location	chr7:18867953-18867954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10237149	0.85[GIH][hapmap]
rs10237280	0.83[GIH][hapmap]
rs10237366	0.81[GIH][hapmap]
rs10486314	0.83[GIH][hapmap];0.80[MEX][hapmap]
rs12536836	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12540774	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12699994	0.82[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs12700003	0.83[GIH][hapmap]
rs13238389	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13245206	0.84[GIH][hapmap]
rs17349860	0.95[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2016515	0.81[CEU][hapmap];0.89[GIH][hapmap];0.81[EUR][1000 genomes]
rs2028015	0.84[GIH][hapmap]
rs2073963	0.86[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2073965	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3852256	0.89[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3852257	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6461385	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6461386	0.95[CHB][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[ASN][1000 genomes]
rs6461387	0.80[GIH][hapmap]
rs6461389	0.85[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap]
rs6461394	0.87[GIH][hapmap];0.80[MEX][hapmap]
rs6951745	0.82[GIH][hapmap];0.80[MEX][hapmap]
rs756854	0.82[JPT][hapmap]
rs7795433	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7811991	0.82[JPT][hapmap]
rs957958	0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs957960	0.95[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18854000-18874400	Weak transcription	Aorta	Aorta
2	chr7:18866200-18869000	Weak transcription	Osteobl	bone
3	chr7:18866800-18885200	Weak transcription	Primary B cells from cord blood	blood
4	chr7:18867200-18882400	Weak transcription	Left Ventricle	heart
5	chr7:18867800-18868000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:18867800-18870000	Enhancers	HSMM	muscle

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