Variant report

Variant	rs756854
Chromosome Location	chr7:18903015-18903016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10230371	0.82[AMR][1000 genomes]
rs10237149	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10237280	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10237366	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10270210	0.84[AMR][1000 genomes]
rs10486314	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12530943	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12536081	0.80[AMR][1000 genomes]
rs12536836	0.91[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs12699998	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12699999	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12700001	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12700002	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12700003	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13233322	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13238389	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs13242758	0.93[ASN][1000 genomes]
rs13245206	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2073963	0.86[JPT][hapmap]
rs2249817	0.81[CEU][hapmap];0.87[AMR][1000 genomes]
rs34854568	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3852256	0.81[JPT][hapmap]
rs55761404	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59987684	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60976379	0.82[AMR][1000 genomes]
rs6461386	0.88[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs6461387	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6461389	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6461390	0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6461391	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6461392	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6461393	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6461394	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67248060	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6951144	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6951522	0.82[JPT][hapmap]
rs6951745	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6973029	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756853	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs7782319	0.83[CHB][hapmap]
rs7801037	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7811991	1.00[JPT][hapmap]
rs957960	0.92[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18901600-18904200	Weak transcription	Adipose Nuclei	Adipose
2	chr7:18901600-18905600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:18901600-18905800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:18901800-18905200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:18901800-18905200	Weak transcription	NHDF-Ad	bronchial
6	chr7:18901800-18905600	Weak transcription	Osteobl	bone
7	chr7:18902000-18904800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:18902400-18903800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:18903000-18940000	Weak transcription	Aorta	Aorta

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