Variant report

Variant	rs10270210
Chromosome Location	chr7:18920210-18920211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10230371	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10237149	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10237280	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10237366	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12699998	0.88[AMR][1000 genomes]
rs12700001	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12700002	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12700003	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13245206	0.81[AMR][1000 genomes]
rs2249817	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34854568	0.83[AMR][1000 genomes]
rs59987684	0.80[AMR][1000 genomes]
rs6461387	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6461390	0.88[AMR][1000 genomes]
rs6461391	0.88[AMR][1000 genomes]
rs6461392	0.84[AMR][1000 genomes]
rs6461394	0.84[AMR][1000 genomes]
rs6951144	0.85[AMR][1000 genomes]
rs6951745	0.83[AMR][1000 genomes]
rs756854	0.84[AMR][1000 genomes]
rs7801037	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1030062	chr7:18915874-18943409	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18906200-18929200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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