Variant report

Variant	rs12700001
Chromosome Location	chr7:18904400-18904401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10230371	0.80[AMR][1000 genomes]
rs10237149	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10237280	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10237366	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10270210	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10486314	0.86[EUR][1000 genomes]
rs12530943	0.83[EUR][1000 genomes]
rs12536081	0.84[EUR][1000 genomes]
rs12536836	0.82[EUR][1000 genomes]
rs12699998	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12699999	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12700002	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12700003	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13233322	0.86[EUR][1000 genomes]
rs2249817	0.83[AMR][1000 genomes]
rs2286213	0.83[EUR][1000 genomes]
rs34854568	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55761404	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59987684	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6461387	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6461389	0.85[EUR][1000 genomes]
rs6461390	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6461391	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6461392	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6461393	0.83[EUR][1000 genomes]
rs6461394	0.80[AMR][1000 genomes]
rs67248060	0.83[EUR][1000 genomes]
rs6951144	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6951745	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6973029	0.87[EUR][1000 genomes]
rs756854	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7794241	0.83[EUR][1000 genomes]
rs7801037	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18901600-18905600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:18901600-18905800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:18901800-18905200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:18901800-18905200	Weak transcription	NHDF-Ad	bronchial
5	chr7:18901800-18905600	Weak transcription	Osteobl	bone
6	chr7:18902000-18904800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
8	chr7:18903800-18907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:18904200-18904400	Enhancers	Adipose Nuclei	Adipose
10	chr7:18904400-18904800	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links