Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10230371	0.80[CEU][hapmap]
rs10237149	0.83[EUR][1000 genomes]
rs10237280	0.82[EUR][1000 genomes]
rs10237366	0.82[EUR][1000 genomes]
rs12699998	0.83[EUR][1000 genomes]
rs12700001	0.82[EUR][1000 genomes]
rs13238389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13245206	0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs2073963	0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2073965	0.90[ASN][1000 genomes]
rs2249817	0.85[CEU][hapmap]
rs34854568	0.85[EUR][1000 genomes]
rs3852256	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs55761404	0.81[EUR][1000 genomes]
rs59987684	0.83[EUR][1000 genomes]
rs6461386	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461387	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs6461390	0.85[EUR][1000 genomes]
rs6461391	0.84[EUR][1000 genomes]
rs67248060	0.84[EUR][1000 genomes]
rs6951522	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6973029	0.82[CHB][hapmap]
rs756854	0.91[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs7795433	0.86[ASN][1000 genomes]
rs7801037	0.85[EUR][1000 genomes]
rs957958	0.84[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs957960	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18866800-18885200	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18867200-18882400	Weak transcription	Left Ventricle	heart
3	chr7:18868800-18887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:18875600-18888000	Weak transcription	Aorta	Aorta

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