Variant report
Variant | rs13241121 |
---|---|
Chromosome Location | chr7:150311503-150311504 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10952277 | 0.82[ASN][1000 genomes] |
rs11486916 | 0.81[ASN][1000 genomes] |
rs11761189 | 0.82[ASN][1000 genomes] |
rs11764032 | 0.81[EUR][1000 genomes] |
rs11764049 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11764138 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11764186 | 0.81[ASN][1000 genomes] |
rs11767598 | 0.81[EUR][1000 genomes] |
rs11975366 | 0.83[ASN][1000 genomes] |
rs11981436 | 0.81[ASN][1000 genomes] |
rs11981515 | 0.81[ASN][1000 genomes] |
rs11981976 | 0.83[ASN][1000 genomes] |
rs11982037 | 0.83[ASN][1000 genomes] |
rs12154687 | 0.84[EUR][1000 genomes] |
rs12397707 | 0.82[EUR][1000 genomes] |
rs12535208 | 0.83[EUR][1000 genomes] |
rs12537789 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12540251 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12540286 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12666582 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12667211 | 0.81[AMR][1000 genomes] |
rs12671272 | 0.81[ASN][1000 genomes] |
rs12671275 | 0.81[ASN][1000 genomes] |
rs12673131 | 0.80[ASN][1000 genomes] |
rs12673133 | 0.81[ASN][1000 genomes] |
rs12673168 | 0.81[ASN][1000 genomes] |
rs13220967 | 0.84[EUR][1000 genomes] |
rs13221085 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs13222892 | 0.81[ASN][1000 genomes] |
rs13223299 | 0.82[ASN][1000 genomes] |
rs13223343 | 0.84[ASN][1000 genomes] |
rs13223512 | 0.82[ASN][1000 genomes] |
rs13225097 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs13225393 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13225610 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13226396 | 0.83[ASN][1000 genomes] |
rs13230842 | 0.82[ASN][1000 genomes] |
rs13232683 | 0.81[ASN][1000 genomes] |
rs13232785 | 0.81[ASN][1000 genomes] |
rs13232989 | 0.80[ASN][1000 genomes] |
rs13235529 | 0.81[ASN][1000 genomes] |
rs13235632 | 0.81[ASN][1000 genomes] |
rs13236567 | 0.81[ASN][1000 genomes] |
rs13236678 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13240099 | 0.84[EUR][1000 genomes] |
rs13240106 | 0.84[EUR][1000 genomes] |
rs17837503 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2373805 | 0.81[ASN][1000 genomes] |
rs2373806 | 0.81[ASN][1000 genomes] |
rs2888664 | 0.81[ASN][1000 genomes] |
rs34035483 | 0.81[ASN][1000 genomes] |
rs34118164 | 0.81[ASN][1000 genomes] |
rs34208822 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs34476103 | 0.81[ASN][1000 genomes] |
rs34534990 | 0.81[ASN][1000 genomes] |
rs34803745 | 0.81[ASN][1000 genomes] |
rs34815266 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs34912132 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35113886 | 0.83[ASN][1000 genomes] |
rs35182796 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35188092 | 0.81[ASN][1000 genomes] |
rs35346811 | 0.81[ASN][1000 genomes] |
rs35408569 | 0.86[ASN][1000 genomes] |
rs35428045 | 0.81[ASN][1000 genomes] |
rs35432864 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35462231 | 0.81[ASN][1000 genomes] |
rs35464700 | 0.85[EUR][1000 genomes] |
rs35492812 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35512856 | 0.80[ASN][1000 genomes] |
rs35731211 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35737876 | 0.83[ASN][1000 genomes] |
rs35821632 | 0.81[ASN][1000 genomes] |
rs4339549 | 0.81[ASN][1000 genomes] |
rs4339550 | 0.82[ASN][1000 genomes] |
rs4367453 | 0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4382385 | 0.82[ASN][1000 genomes] |
rs4584065 | 0.81[ASN][1000 genomes] |
rs55681398 | 0.80[EUR][1000 genomes] |
rs56272736 | 0.83[ASN][1000 genomes] |
rs60213500 | 0.82[ASN][1000 genomes] |
rs62502294 | 0.81[EUR][1000 genomes] |
rs62502295 | 0.80[ASN][1000 genomes] |
rs62502296 | 0.81[ASN][1000 genomes] |
rs62502298 | 0.81[ASN][1000 genomes] |
rs62502300 | 0.81[ASN][1000 genomes] |
rs62502326 | 0.81[ASN][1000 genomes] |
rs62502342 | 0.82[ASN][1000 genomes] |
rs62504164 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs62504165 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6942848 | 0.82[ASN][1000 genomes] |
rs6950079 | 0.81[ASN][1000 genomes] |
rs6950421 | 0.81[ASN][1000 genomes] |
rs6950529 | 0.81[AMR][1000 genomes] |
rs6954076 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6954709 | 0.81[ASN][1000 genomes] |
rs6954884 | 0.81[ASN][1000 genomes] |
rs6954937 | 0.81[ASN][1000 genomes] |
rs6968208 | 0.83[ASN][1000 genomes] |
rs6968599 | 0.85[ASN][1000 genomes] |
rs6969250 | 0.81[ASN][1000 genomes] |
rs6971133 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6971221 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6971529 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7781524 | 0.81[ASN][1000 genomes] |
rs7781834 | 0.83[ASN][1000 genomes] |
rs7781992 | 0.82[ASN][1000 genomes] |
rs7788112 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7788300 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7788683 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7788885 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7796338 | 0.81[ASN][1000 genomes] |
rs9768447 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9770112 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034409 | chr7:149844639-150447071 | Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
2 | nsv608990 | chr7:149961274-150707488 | Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
3 | nsv1017368 | chr7:150016952-150655773 | Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 80 gene(s) | inside rSNPs | diseases |
4 | nsv539195 | chr7:150016952-150655773 | Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 80 gene(s) | inside rSNPs | diseases |
5 | esv16529 | chr7:150249312-150312843 | Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
6 | esv2758617 | chr7:150251949-150463804 | Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
7 | esv2759573 | chr7:150251949-150463804 | Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
8 | esv3388935 | chr7:150301204-150374532 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv970607 | chr7:150301369-150311530 | Enhancers Weak transcription Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:150300600-150316800 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
2 | chr7:150309000-150311600 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
3 | chr7:150309000-150312600 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
4 | chr7:150309000-150313000 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |
5 | chr7:150309200-150312000 | Enhancers | Primary T helper cells fromperipheralblood | blood |
6 | chr7:150309400-150312600 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
7 | chr7:150309800-150312200 | Enhancers | Primary T cells from cord blood | blood |
8 | chr7:150309800-150312800 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
9 | chr7:150310000-150312400 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
10 | chr7:150310200-150312000 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
11 | chr7:150310200-150312200 | Enhancers | Primary T regulatory cells fromperipheralblood | blood |
12 | chr7:150310800-150312800 | Flanking Active TSS | Primary T helper cells PMA-I stimulated | -- |
13 | chr7:150311000-150312000 | Weak transcription | Dnd41 | blood |
14 | chr7:150311400-150313400 | Enhancers | Primary T cells fromperipheralblood | blood |