Variant report

Variant	rs6968599
Chromosome Location	chr7:150298020-150298021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10952277	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11486916	0.85[ASN][1000 genomes]
rs11761189	0.83[ASN][1000 genomes]
rs11764049	0.86[ASN][1000 genomes]
rs11764138	0.85[ASN][1000 genomes]
rs11764186	0.85[ASN][1000 genomes]
rs11767574	0.82[ASN][1000 genomes]
rs11975366	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11981436	0.85[ASN][1000 genomes]
rs11981515	0.85[ASN][1000 genomes]
rs11981976	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11982037	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12537789	0.82[ASN][1000 genomes]
rs12540251	0.82[ASN][1000 genomes]
rs12540286	0.85[ASN][1000 genomes]
rs12666582	0.83[ASN][1000 genomes]
rs12667211	0.86[AMR][1000 genomes]
rs12671272	0.85[ASN][1000 genomes]
rs12671275	0.85[ASN][1000 genomes]
rs12673131	0.83[ASN][1000 genomes]
rs12673133	0.85[ASN][1000 genomes]
rs12673168	0.85[ASN][1000 genomes]
rs12673197	0.82[ASN][1000 genomes]
rs13221085	0.83[ASN][1000 genomes]
rs13222892	0.85[ASN][1000 genomes]
rs13223299	0.86[ASN][1000 genomes]
rs13223343	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13223458	0.80[ASN][1000 genomes]
rs13223512	0.84[AMR][1000 genomes]
rs13223813	0.81[AMR][1000 genomes]
rs13225097	0.83[ASN][1000 genomes]
rs13225393	0.82[ASN][1000 genomes]
rs13225610	0.82[ASN][1000 genomes]
rs13226396	0.82[AMR][1000 genomes]
rs13230842	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13232683	0.85[ASN][1000 genomes]
rs13232785	0.85[ASN][1000 genomes]
rs13232989	0.84[ASN][1000 genomes]
rs13235529	0.85[ASN][1000 genomes]
rs13235632	0.85[ASN][1000 genomes]
rs13236567	0.85[ASN][1000 genomes]
rs13236678	0.82[ASN][1000 genomes]
rs13241121	0.85[ASN][1000 genomes]
rs17837503	0.82[ASN][1000 genomes]
rs2373805	0.85[ASN][1000 genomes]
rs2373806	0.85[ASN][1000 genomes]
rs2888664	0.85[ASN][1000 genomes]
rs34035483	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34118164	0.85[ASN][1000 genomes]
rs34208822	0.82[ASN][1000 genomes]
rs34476103	0.85[ASN][1000 genomes]
rs34534990	0.85[ASN][1000 genomes]
rs34803745	0.85[ASN][1000 genomes]
rs34815266	0.82[ASN][1000 genomes]
rs34912132	0.82[ASN][1000 genomes]
rs34990905	0.82[ASN][1000 genomes]
rs35113886	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35182796	0.82[ASN][1000 genomes]
rs35188092	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35346811	0.85[ASN][1000 genomes]
rs35408569	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35428045	0.85[ASN][1000 genomes]
rs35432864	0.82[ASN][1000 genomes]
rs35462231	0.82[ASN][1000 genomes]
rs35492812	0.82[ASN][1000 genomes]
rs35512856	0.83[ASN][1000 genomes]
rs35731211	0.82[ASN][1000 genomes]
rs35737876	0.87[ASN][1000 genomes]
rs35821632	0.85[ASN][1000 genomes]
rs4339549	0.85[ASN][1000 genomes]
rs4339550	0.83[ASN][1000 genomes]
rs4367453	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4382385	0.83[ASN][1000 genomes]
rs4584065	0.85[ASN][1000 genomes]
rs56272736	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60213500	0.83[ASN][1000 genomes]
rs62502295	0.83[ASN][1000 genomes]
rs62502296	0.84[ASN][1000 genomes]
rs62502297	0.81[ASN][1000 genomes]
rs62502298	0.85[ASN][1000 genomes]
rs62502300	0.85[ASN][1000 genomes]
rs62502326	0.85[ASN][1000 genomes]
rs62502342	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62504165	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6942848	0.86[ASN][1000 genomes]
rs6950079	0.85[ASN][1000 genomes]
rs6950421	0.85[ASN][1000 genomes]
rs6950529	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6954076	0.82[ASN][1000 genomes]
rs6954709	0.85[ASN][1000 genomes]
rs6954884	0.85[ASN][1000 genomes]
rs6954937	0.85[ASN][1000 genomes]
rs6968208	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6968256	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6969250	0.85[ASN][1000 genomes]
rs6971133	0.82[ASN][1000 genomes]
rs6971221	0.82[ASN][1000 genomes]
rs6971529	0.82[ASN][1000 genomes]
rs73163513	0.81[EUR][1000 genomes]
rs7781524	0.85[ASN][1000 genomes]
rs7781992	0.86[ASN][1000 genomes]
rs7788112	0.82[ASN][1000 genomes]
rs7788300	0.82[ASN][1000 genomes]
rs7788683	0.82[ASN][1000 genomes]
rs7788885	0.82[ASN][1000 genomes]
rs7796338	0.85[ASN][1000 genomes]
rs9768447	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	esv16529	chr7:150249312-150312843	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv1793193	chr7:150285801-150301569	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
10	esv1800872	chr7:150285801-150301569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
11	esv1804946	chr7:150285801-150301569	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
12	esv1814847	chr7:150285801-150301569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
13	esv1835596	chr7:150285801-150301569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
14	esv1841982	chr7:150285801-150301569	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv442238	chr7:150285801-150301569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
16	esv13954	chr7:150292485-150307048	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3490967	chr7:150293370-150301941	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3490968	chr7:150293370-150301941	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3383807	chr7:150297543-150298092	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150292600-150300200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:150293000-150300200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:150293200-150300200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:150294400-150300200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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