Variant report

Variant	rs13241141
Chromosome Location	chr7:152457445-152457446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:52209825..52210743-chr7:152456859..152457654,2	MCF-7	breast:
2	chr7:151814006..151817004-chr7:152456983..152459909,2	K562	blood:
3	chr7:152443156..152446125-chr7:152457371..152459756,3	K562	blood:
4	chr20:10414863..10415492-chr7:152456848..152457532,2	Hela-S3	cervix:
5	chr16:46823466..46824461-chr7:152456864..152457453,2	Hela-S3	cervix:
6	chr7:152159214..152163397-chr7:152455316..152459065,6	MCF-7	breast:
7	chr7:152159418..152164481-chr7:152455770..152458995,5	K562	blood:
8	chr7:152372618..152374953-chr7:152456032..152458958,3	MCF-7	breast:
9	chr7:152442786..152449495-chr7:152455161..152460241,10	K562	blood:
10	chr7:152350020..152352895-chr7:152457250..152459622,2	K562	blood:
11	chr7:152456924..152457521-chr9:86595315..86595962,2	Hela-S3	cervix:
12	chr7:151289994..151291527-chr7:152457246..152459829,2	K562	blood:
13	chr7:152272316..152275315-chr7:152457417..152459478,2	K562	blood:
14	chr7:152371235..152373485-chr7:152456876..152459275,3	K562	blood:
15	chr7:151721857..151723764-chr7:152455649..152457553,2	K562	blood:
16	chr7:152453911..152455886-chr7:152456348..152457973,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261455	Chromatin interaction
ENSG00000260782	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000178234	Chromatin interaction
ENSG00000196584	Chromatin interaction
ENSG00000165119	Chromatin interaction
ENSG00000214003	Chromatin interaction
ENSG00000244328	Chromatin interaction
ENSG00000140795	Chromatin interaction
ENSG00000178966	Chromatin interaction
ENSG00000125863	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10234383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap]
rs10271502	1.00[CHB][hapmap]
rs12672082	1.00[CHB][hapmap]
rs4987090	1.00[CHB][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949483	chr7:151791158-152499822	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1021495	chr7:152032655-152458249	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv539207	chr7:152032655-152458249	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152456000-152458000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:152456200-152457600	Active TSS	Brain Anterior Caudate	brain
3	chr7:152456200-152457800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr7:152456200-152457800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:152456200-152457800	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr7:152456200-152457800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:152456200-152457800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr7:152456200-152457800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr7:152456200-152458000	Active TSS	H1 Cell Line	embryonic stem cell
10	chr7:152456200-152458000	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr7:152456200-152458000	Active TSS	Fetal Brain Female	brain
12	chr7:152456200-152458200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr7:152456200-152458200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:152456200-152458200	Active TSS	Fetal Kidney	kidney
15	chr7:152456400-152457600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:152456400-152457600	Active TSS	Primary T cells from cord blood	blood
17	chr7:152456400-152457600	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr7:152456400-152457600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:152456400-152457600	Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr7:152456400-152457600	Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr7:152456400-152457600	Active TSS	Aorta	Aorta
22	chr7:152456400-152457600	Active TSS	Brain Angular Gyrus	brain
23	chr7:152456400-152457600	Active TSS	Brain Hippocampus Middle	brain
24	chr7:152456400-152457600	Active TSS	Colon Smooth Muscle	Colon
25	chr7:152456400-152457600	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr7:152456400-152457600	Active TSS	Esophagus	oesophagus
27	chr7:152456400-152457600	Active TSS	Fetal Intestine Large	intestine
28	chr7:152456400-152457600	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr7:152456400-152457600	Active TSS	Small Intestine	intestine
30	chr7:152456400-152457600	Active TSS	Hela-S3	cervix
31	chr7:152456400-152457800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:152456400-152457800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:152456400-152457800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:152456400-152457800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:152456400-152457800	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr7:152456400-152457800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr7:152456400-152457800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:152456400-152457800	Active TSS	Brain Cingulate Gyrus	brain
39	chr7:152456400-152457800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:152456400-152457800	Active TSS	Gastric	stomach
41	chr7:152456400-152457800	Active TSS	Left Ventricle	heart
42	chr7:152456400-152457800	Active TSS	Psoas Muscle	Psoas
43	chr7:152456400-152457800	Active TSS	A549	lung
44	chr7:152456400-152457800	Active TSS	HSMM	muscle
45	chr7:152456400-152458000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr7:152456400-152458000	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr7:152456400-152458000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr7:152456400-152458000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr7:152456400-152458000	Active TSS	Fetal Muscle Trunk	muscle
50	chr7:152456400-152458000	Active TSS	Right Ventricle	heart

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