Variant report

Variant	rs4987090
Chromosome Location	chr7:152357861-152357862
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:152355558..152361576-chr7:152369939..152374023,8	K562	blood:
2	chr7:152345367..152347236-chr7:152355936..152358465,2	K562	blood:
3	chr7:152357349..152360211-chr7:152456131..152458128,2	K562	blood:

Variant related genes	Relation type
ENSG00000133627	Chromatin interaction
ENSG00000196584	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10234383	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10271502	1.00[CHB][hapmap]
rs12672082	1.00[CHB][hapmap]
rs13241141	1.00[CHB][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949242	chr7:151521578-152425223	Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv948787	chr7:151681844-152425223	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv949483	chr7:151791158-152499822	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
4	nsv1021495	chr7:152032655-152458249	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv539207	chr7:152032655-152458249	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv1017565	chr7:152147930-152455272	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv889505	chr7:152220077-152380451	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv1015722	chr7:152262998-152451023	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv981616	chr7:152300055-152433602	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
13	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152339200-152372000	Weak transcription	Thymus	Thymus
2	chr7:152340000-152361600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:152340600-152372000	Weak transcription	Brain Germinal Matrix	brain
4	chr7:152341200-152367600	Strong transcription	Dnd41	blood
5	chr7:152341400-152358400	Weak transcription	Placenta	Placenta
6	chr7:152341400-152359400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:152341600-152358400	Weak transcription	Fetal Intestine Small	intestine
8	chr7:152341800-152372000	Weak transcription	NH-A	brain
9	chr7:152342200-152371200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:152342800-152359000	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr7:152343400-152371800	Weak transcription	HMEC	breast
12	chr7:152343800-152360200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:152344000-152360400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:152344000-152370800	Weak transcription	NHLF	lung
15	chr7:152344200-152359400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:152344400-152372000	Weak transcription	NHDF-Ad	bronchial
17	chr7:152344800-152361000	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:152344800-152361800	Weak transcription	Fetal Lung	lung
19	chr7:152345000-152359600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:152345200-152359200	Weak transcription	Primary B cells from cord blood	blood
21	chr7:152345400-152361600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:152346000-152362200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:152346200-152371800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:152346600-152372000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:152346800-152361600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:152347000-152372000	Weak transcription	HSMM	muscle
27	chr7:152347200-152372000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:152347600-152364600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:152347600-152368200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:152347600-152372000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:152347600-152372000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:152348200-152359400	Weak transcription	Osteobl	bone
33	chr7:152350000-152366200	Weak transcription	Hela-S3	cervix
34	chr7:152350600-152371800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:152350800-152358600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:152351400-152358200	Weak transcription	Fetal Heart	heart
37	chr7:152351400-152360000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:152351600-152359600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:152352200-152360400	Weak transcription	HepG2	liver
40	chr7:152352800-152359000	Weak transcription	Fetal Brain Male	brain
41	chr7:152353200-152359400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:152353400-152372200	Weak transcription	Fetal Stomach	stomach
43	chr7:152353600-152359600	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:152354600-152371400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr7:152355000-152364600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr7:152355400-152358200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:152355400-152358600	Strong transcription	K562	blood
48	chr7:152355600-152358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:152355600-152359000	Strong transcription	A549	lung
50	chr7:152355600-152359600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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