Variant report

Variant	rs1324654
Chromosome Location	chr1:158121271-158121272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12097784	0.95[AMR][1000 genomes]
rs72711982	0.93[EUR][1000 genomes]
rs869536	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158117000-158122000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr1:158119400-158122600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:158119800-158124000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:158120000-158122400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:158120000-158124000	Weak transcription	HSMMtube	muscle
6	chr1:158120000-158124200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:158120200-158121800	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:158120200-158122200	Weak transcription	HMEC	breast
9	chr1:158120200-158122400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:158120200-158122400	Weak transcription	NHEK	skin
11	chr1:158120200-158123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:158120200-158123600	Weak transcription	HSMM	muscle
13	chr1:158120200-158125200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:158120400-158124000	Weak transcription	Spleen	Spleen
15	chr1:158120600-158123200	Weak transcription	GM12878-XiMat	blood
16	chr1:158120600-158124400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:158120800-158121800	Enhancers	Primary B cells from cord blood	blood
18	chr1:158120800-158123800	Weak transcription	K562	blood
19	chr1:158121200-158121400	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links