Variant report

Variant	rs12097784
Chromosome Location	chr1:158133061-158133062
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12042149	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12068986	0.84[ASN][1000 genomes]
rs1324654	0.95[AMR][1000 genomes]
rs16839865	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1853687	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2093918	0.84[ASN][1000 genomes]
rs4656612	0.85[ASN][1000 genomes]
rs4656904	0.80[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4656905	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs61321196	0.85[ASN][1000 genomes]
rs66845334	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690094	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs869536	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158131200-158134600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:158131800-158134800	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:158132000-158134000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr1:158132600-158133600	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr1:158133000-158133200	Enhancers	Thymus	Thymus
6	chr1:158133000-158133600	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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