Variant report

Variant	rs4656904
Chromosome Location	chr1:158114088-158114089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12042149	0.86[ASN][1000 genomes]
rs12077177	1.00[YRI][hapmap]
rs12097784	0.87[ASN][1000 genomes]
rs1408544	0.81[AMR][1000 genomes]
rs16839865	0.86[ASN][1000 genomes]
rs1853687	0.86[ASN][1000 genomes]
rs4656905	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs66845334	0.87[ASN][1000 genomes]
rs6690094	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158110800-158114800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:158111000-158114600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:158111000-158114800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:158111000-158114800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:158111000-158114800	Weak transcription	HMEC	breast
6	chr1:158111000-158115200	Weak transcription	HSMMtube	muscle
7	chr1:158111000-158115800	Weak transcription	HSMM	muscle
8	chr1:158111000-158118600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:158111200-158115000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:158112400-158114200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:158113200-158117600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:158113200-158119000	Weak transcription	Thymus	Thymus
13	chr1:158113600-158116000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:158113800-158114200	Enhancers	Spleen	Spleen
15	chr1:158113800-158117000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:158114000-158115000	Enhancers	Fetal Muscle Trunk	muscle
17	chr1:158114000-158116800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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