Variant report

Variant	rs66845334
Chromosome Location	chr1:158133383-158133384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12042149	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12068986	0.84[ASN][1000 genomes]
rs12097784	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16839865	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1853687	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2093918	0.84[ASN][1000 genomes]
rs4656612	0.85[ASN][1000 genomes]
rs4656904	0.87[ASN][1000 genomes]
rs4656905	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61321196	0.85[ASN][1000 genomes]
rs6690094	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68106373	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7548010	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs869536	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158131200-158134600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:158131800-158134800	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:158132000-158134000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr1:158132600-158133600	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr1:158133000-158133600	Flanking Active TSS	GM12878-XiMat	blood
6	chr1:158133200-158133400	Bivalent Enhancer	Brain Hippocampus Middle	brain
7	chr1:158133200-158133600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:158133200-158133800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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