Variant report

Variant	rs61321196
Chromosome Location	chr1:158095440-158095441
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12042149	0.84[ASN][1000 genomes]
rs12068986	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12097784	0.85[ASN][1000 genomes]
rs16839865	0.84[ASN][1000 genomes]
rs1853687	0.84[ASN][1000 genomes]
rs1998639	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2093918	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656612	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656905	0.84[ASN][1000 genomes]
rs66845334	0.85[ASN][1000 genomes]
rs6690094	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158092600-158095600	Enhancers	HMEC	breast
2	chr1:158093800-158095600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:158093800-158097600	Enhancers	Fetal Thymus	thymus
4	chr1:158094000-158096800	Enhancers	Thymus	Thymus
5	chr1:158094400-158099600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:158095000-158096800	Enhancers	Dnd41	blood
7	chr1:158095200-158095600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:158095200-158096200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:158095400-158095600	Enhancers	Adipose Nuclei	Adipose
10	chr1:158095400-158095800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:158095400-158096600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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