Variant report

Variant	rs2093918
Chromosome Location	chr1:158092345-158092346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12042149	0.84[ASN][1000 genomes]
rs12068986	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12097784	0.84[ASN][1000 genomes]
rs16839865	0.84[ASN][1000 genomes]
rs1853687	0.84[ASN][1000 genomes]
rs1998639	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4656612	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656905	0.84[ASN][1000 genomes]
rs61321196	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66845334	0.84[ASN][1000 genomes]
rs6690094	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158084000-158092600	Weak transcription	HMEC	breast
2	chr1:158088800-158094000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:158090400-158093600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:158090400-158093800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:158090400-158093800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:158090400-158094000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:158090400-158094000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:158090400-158094000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:158090800-158094000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:158091600-158094000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:158091800-158092800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:158091800-158092800	Weak transcription	Fetal Thymus	thymus
13	chr1:158091800-158093400	Weak transcription	NHEK	skin
14	chr1:158091800-158094000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:158091800-158094000	Weak transcription	Pancreas	Pancrea
16	chr1:158091800-158094600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:158092000-158094000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:158092000-158094000	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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