Variant report

Variant	rs16839865
Chromosome Location	chr1:158125642-158125643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12042149	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12068986	0.84[ASN][1000 genomes]
rs12097784	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1853687	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093918	0.84[ASN][1000 genomes]
rs4656612	0.84[ASN][1000 genomes]
rs4656904	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4656905	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61321196	0.84[ASN][1000 genomes]
rs66845334	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6690094	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68106373	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7548010	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs869536	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158122200-158126000	Enhancers	HMEC	breast
2	chr1:158122400-158125800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:158122400-158126000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:158122400-158126000	Enhancers	NHEK	skin
5	chr1:158122600-158126000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:158123800-158125800	Enhancers	K562	blood
7	chr1:158125000-158131800	Weak transcription	Primary B cells from cord blood	blood
8	chr1:158125200-158126400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:158125200-158130000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr1:158125200-158130200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:158125200-158130200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr1:158125600-158125800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:158125600-158125800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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