Variant report

Variant	rs68106373
Chromosome Location	chr1:158118356-158118357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:157921582..157924104-chr1:158117652..158119566,2	K562	blood:
2	chr1:158113593..158115146-chr1:158117653..158120563,2	K562	blood:
3	chr1:158118279..158121223-chr1:158124014..158125961,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12042149	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16839865	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1853687	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4656905	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66845334	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6690094	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7548010	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs869536	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158111000-158118600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:158113200-158119000	Weak transcription	Thymus	Thymus
3	chr1:158114200-158118400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:158114800-158118800	Enhancers	Adipose Nuclei	Adipose
5	chr1:158114800-158119000	Enhancers	Right Atrium	heart
6	chr1:158115000-158118800	Enhancers	K562	blood
7	chr1:158115000-158119000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:158115600-158118800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:158115600-158118800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:158115600-158118800	Weak transcription	A549	lung
11	chr1:158115600-158119200	Weak transcription	Aorta	Aorta
12	chr1:158115800-158118800	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:158116000-158118600	Weak transcription	Brain Substantia Nigra	brain
14	chr1:158116000-158119000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:158116000-158119000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:158116000-158119000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:158116200-158118800	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:158116200-158119000	Weak transcription	NHDF-Ad	bronchial
19	chr1:158116400-158118800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:158116400-158119000	Weak transcription	Pancreas	Pancrea
21	chr1:158116400-158119000	Weak transcription	Spleen	Spleen
22	chr1:158116400-158119000	Weak transcription	HSMM	muscle
23	chr1:158116600-158119000	Weak transcription	Ovary	ovary
24	chr1:158116600-158119200	Weak transcription	Right Ventricle	heart
25	chr1:158116600-158119200	Enhancers	HMEC	breast
26	chr1:158116800-158118800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:158116800-158118800	Weak transcription	Fetal Heart	heart
28	chr1:158116800-158119000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:158116800-158119000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:158116800-158119000	Weak transcription	Placenta	Placenta
31	chr1:158116800-158119000	Weak transcription	Lung	lung
32	chr1:158116800-158119000	Weak transcription	HUVEC	blood vessel
33	chr1:158116800-158119000	Weak transcription	NH-A	brain
34	chr1:158117000-158119000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:158117000-158119200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:158117000-158122000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr1:158117400-158118800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr1:158117400-158118800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr1:158117400-158120600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr1:158117600-158118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr1:158117600-158118600	Weak transcription	NHEK	skin
42	chr1:158117600-158118800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:158117600-158119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr1:158117600-158119000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:158117600-158119000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr1:158117600-158119000	Weak transcription	Left Ventricle	heart
47	chr1:158117800-158118800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:158117800-158118800	Enhancers	Hela-S3	cervix
49	chr1:158118000-158118400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr1:158118000-158118600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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