Variant report

Variant	rs13250604
Chromosome Location	chr8:87923296-87923297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10088003	0.98[ASN][1000 genomes]
rs11778111	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13257723	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13258790	0.97[EUR][1000 genomes]
rs13260718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2125253	0.94[ASN][1000 genomes]
rs2176	0.87[ASN][1000 genomes]
rs34275895	0.91[ASN][1000 genomes]
rs35619624	0.92[EUR][1000 genomes]
rs4131423	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4269562	0.89[ASN][1000 genomes]
rs4291285	0.94[ASN][1000 genomes]
rs4422790	0.97[EUR][1000 genomes]
rs4451326	0.81[EUR][1000 genomes]
rs4960931	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4961000	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs56406508	0.87[ASN][1000 genomes]
rs6468523	0.83[ASN][1000 genomes]
rs66493340	0.94[ASN][1000 genomes]
rs67958512	0.94[ASN][1000 genomes]
rs6991217	0.97[EUR][1000 genomes]
rs7817373	0.96[EUR][1000 genomes]
rs7818940	0.94[ASN][1000 genomes]
rs7828083	0.94[ASN][1000 genomes]
rs7830781	0.94[ASN][1000 genomes]
rs7831906	0.94[ASN][1000 genomes]
rs7832955	0.97[EUR][1000 genomes]
rs7841447	0.94[ASN][1000 genomes]
rs9649984	0.87[ASN][1000 genomes]
rs9649985	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv891158	chr8:87791641-87956609	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831383	chr8:87827274-88004897	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87922400-87924600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:87922600-87923600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:87923200-87923600	Enhancers	HUES48 Cell Line	embryonic stem cell

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