Variant report

Variant	rs9649985
Chromosome Location	chr8:87926011-87926012
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10088003	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13250604	0.86[ASN][1000 genomes]
rs13260718	0.87[ASN][1000 genomes]
rs2125253	0.84[ASN][1000 genomes]
rs2176	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28726085	0.90[EUR][1000 genomes]
rs34275895	0.81[ASN][1000 genomes]
rs4269562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4291285	0.82[ASN][1000 genomes]
rs4538907	0.93[EUR][1000 genomes]
rs56007240	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs56406508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62529576	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6468523	0.93[ASN][1000 genomes]
rs6468564	0.88[EUR][1000 genomes]
rs6468565	0.90[EUR][1000 genomes]
rs6468566	0.84[EUR][1000 genomes]
rs66493340	0.83[ASN][1000 genomes]
rs67958512	0.83[ASN][1000 genomes]
rs7818940	0.84[ASN][1000 genomes]
rs7821356	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7828083	0.84[ASN][1000 genomes]
rs7830781	0.84[ASN][1000 genomes]
rs7831906	0.84[ASN][1000 genomes]
rs7841043	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7841447	0.84[ASN][1000 genomes]
rs9649984	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv891158	chr8:87791641-87956609	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831383	chr8:87827274-88004897	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87924600-87926200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:87925400-87926200	Enhancers	Brain Angular Gyrus	brain
3	chr8:87925400-87926200	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links