Variant report

Variant	rs13251712
Chromosome Location	chr8:51574478-51574479
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:116959143..116962126-chr8:51573809..51576471,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203865	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10087228	0.81[ASN][1000 genomes]
rs10097209	0.81[ASN][1000 genomes]
rs10097404	0.81[ASN][1000 genomes]
rs10099033	0.83[ASN][1000 genomes]
rs10101076	0.86[ASN][1000 genomes]
rs10110050	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10216649	0.83[ASN][1000 genomes]
rs10429378	0.95[ASN][1000 genomes]
rs10958023	0.95[ASN][1000 genomes]
rs10958026	0.95[ASN][1000 genomes]
rs10958061	0.81[ASN][1000 genomes]
rs10958066	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11785968	0.86[ASN][1000 genomes]
rs11997970	0.95[ASN][1000 genomes]
rs12681303	0.81[ASN][1000 genomes]
rs13250468	0.93[ASN][1000 genomes]
rs13251980	0.84[ASN][1000 genomes]
rs13254513	0.83[EUR][1000 genomes]
rs13263172	0.91[ASN][1000 genomes]
rs1396377	0.95[ASN][1000 genomes]
rs1472907	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483642	0.83[EUR][1000 genomes]
rs1508621	0.81[ASN][1000 genomes]
rs1508623	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1567311	0.83[ASN][1000 genomes]
rs1848437	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1911830	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2202797	0.95[ASN][1000 genomes]
rs2392761	0.81[ASN][1000 genomes]
rs28470779	0.83[ASN][1000 genomes]
rs28647321	0.83[ASN][1000 genomes]
rs28815525	0.81[ASN][1000 genomes]
rs34486025	0.81[ASN][1000 genomes]
rs34871864	0.95[ASN][1000 genomes]
rs35521388	0.81[ASN][1000 genomes]
rs3999808	0.81[ASN][1000 genomes]
rs4242462	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4873153	0.95[ASN][1000 genomes]
rs4873155	0.86[ASN][1000 genomes]
rs6473292	0.87[ASN][1000 genomes]
rs6473319	0.81[ASN][1000 genomes]
rs66730072	0.81[ASN][1000 genomes]
rs67729017	0.83[ASN][1000 genomes]
rs6987633	0.95[ASN][1000 genomes]
rs6991518	0.86[ASN][1000 genomes]
rs6992341	0.83[ASN][1000 genomes]
rs6992551	0.81[ASN][1000 genomes]
rs6999211	0.95[ASN][1000 genomes]
rs7002119	0.84[ASN][1000 genomes]
rs7009895	0.82[ASN][1000 genomes]
rs7012338	0.86[ASN][1000 genomes]
rs7013183	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7013366	0.95[ASN][1000 genomes]
rs7018197	0.81[ASN][1000 genomes]
rs7460470	0.81[ASN][1000 genomes]
rs7812344	0.81[ASN][1000 genomes]
rs7829079	0.81[ASN][1000 genomes]
rs7834585	0.81[ASN][1000 genomes]
rs7844393	0.97[ASN][1000 genomes]
rs7845831	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51570200-51595200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51571800-51575400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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