Variant report

Variant	rs13252510
Chromosome Location	chr8:9765888-9765889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr8:9765595-9766020	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr8:9765348-9765984	H1-hESC	embryonic stem cell:	n/a	n/a
3	SP1	chr8:9765432-9765893	H1-hESC	embryonic stem cell:	n/a	chr8:9765653-9765664 chr8:9765708-9765720 chr8:9765709-9765718

Variant related genes	Relation type
LINC00599	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10092705	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13257038	0.84[EUR][1000 genomes]
rs13274888	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1879536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34081962	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35468549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35916515	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35984801	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs473034	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs516175	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs556819	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs558821	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs587162	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs636817	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68021478	0.88[AMR][1000 genomes]
rs925611	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9761800-9766000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:9762800-9766200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr8:9764600-9766400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:9764600-9766600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:9764600-9766600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
6	chr8:9764800-9766000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:9764800-9766200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr8:9764800-9766400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:9764800-9766600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:9765000-9766000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:9765000-9766000	Active TSS	Fetal Brain Female	brain
12	chr8:9765000-9767200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:9765000-9768400	Weak transcription	Brain Angular Gyrus	brain
14	chr8:9765400-9766000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:9765400-9766000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr8:9765400-9766000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:9765600-9766400	Bivalent Enhancer	Fetal Brain Male	brain
18	chr8:9765600-9767800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr8:9765600-9770200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:9765800-9766000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr8:9765800-9766000	Bivalent Enhancer	Brain Germinal Matrix	brain
22	chr8:9765800-9766200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
23	chr8:9765800-9766800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
24	chr8:9765800-9766800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr8:9765800-9767000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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