Variant report

Variant	rs1879536
Chromosome Location	chr8:9768645-9768646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10092705	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13252510	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13257038	0.82[EUR][1000 genomes]
rs13274888	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34081962	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35468549	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35916515	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35984801	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs473034	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs516175	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs556819	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs558821	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs587162	0.81[AMR][1000 genomes]
rs636817	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68021478	0.88[AMR][1000 genomes]
rs925611	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9765600-9770200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:9766600-9771200	Enhancers	Fetal Brain Male	brain
3	chr8:9767200-9770400	Enhancers	Brain Germinal Matrix	brain
4	chr8:9767800-9768800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:9768000-9768800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:9768000-9768800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr8:9768000-9768800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr8:9768400-9768800	Flanking Active TSS	Fetal Brain Female	brain
9	chr8:9768600-9768800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:9768600-9775800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:9768600-9776600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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