Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124603169..124606438-chr8:124607098..124610050,3	MCF-7	breast:
2	chr8:124595897..124597619-chr8:124606710..124608855,2	K562	blood:
3	chr8:124552309..124555212-chr8:124605796..124608821,3	MCF-7	breast:
4	chr8:124608092..124610186-chr8:124645249..124647691,2	MCF-7	breast:
5	chr8:124575903..124576989-chr8:124608630..124609392,4	MCF-7	breast:
6	chr8:124597117..124599176-chr8:124606571..124610166,3	MCF-7	breast:
7	chr8:124589966..124594613-chr8:124606326..124610133,5	MCF-7	breast:
8	chr8:124607569..124610027-chr8:124612022..124613929,3	MCF-7	breast:
9	chr8:124576290..124577996-chr8:124608283..124610311,3	MCF-7	breast:
10	chr8:124559237..124561974-chr8:124607116..124608954,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000156804	Chromatin interaction

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10089696	0.90[ASN][1000 genomes]
rs10091164	0.88[ASN][1000 genomes]
rs10102942	0.88[ASN][1000 genomes]
rs11776999	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12547165	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12547541	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13250678	0.88[ASN][1000 genomes]
rs13251106	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13261294	0.99[ASN][1000 genomes]
rs13266971	0.87[EUR][1000 genomes]
rs13273000	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35805809	0.80[EUR][1000 genomes]
rs4515533	0.88[ASN][1000 genomes]
rs4870857	0.86[ASN][1000 genomes]
rs4870858	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124602400-124609000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:124604400-124609200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:124604800-124609200	Weak transcription	Aorta	Aorta
4	chr8:124605000-124608800	Weak transcription	Placenta	Placenta
5	chr8:124605000-124609800	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:124607000-124609600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:124607200-124608800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:124607200-124608800	Weak transcription	Osteobl	bone
9	chr8:124607200-124609000	Weak transcription	HSMM	muscle
10	chr8:124608000-124610400	Enhancers	Esophagus	oesophagus
11	chr8:124608400-124609200	Enhancers	Fetal Intestine Small	intestine
12	chr8:124608600-124608800	Enhancers	Pancreas	Pancrea
13	chr8:124608600-124608800	Enhancers	Right Atrium	heart
14	chr8:124608600-124609200	Enhancers	Stomach Smooth Muscle	stomach
15	chr8:124608600-124609800	Enhancers	Psoas Muscle	Psoas
16	chr8:124608600-124610200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:124608600-124610400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:124608600-124610400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:124608600-124610400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr8:124608600-124610400	Enhancers	HMEC	breast
21	chr8:124608600-124610400	Enhancers	HSMMtube	muscle

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