Variant report

Variant	rs35805809
Chromosome Location	chr8:124571360-124571361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11776999	0.85[EUR][1000 genomes]
rs12547165	0.80[EUR][1000 genomes]
rs12547541	0.85[EUR][1000 genomes]
rs13251106	0.85[EUR][1000 genomes]
rs13252512	0.80[EUR][1000 genomes]
rs13256524	0.92[ASN][1000 genomes]
rs13263673	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13264867	0.92[ASN][1000 genomes]
rs13266630	0.92[ASN][1000 genomes]
rs13266971	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13273000	0.80[EUR][1000 genomes]
rs2385443	0.91[ASN][1000 genomes]
rs7827993	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124558800-124571400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:124571000-124575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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