Variant report

Variant	rs1325273
Chromosome Location	chr1:85332120-85332121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:85332060-85332358	HepG2	liver:	n/a	chr1:85332191-85332206 chr1:85332191-85332202 chr1:85332191-85332202
2	MAFK	chr1:85332062-85332258	HepG2	liver:	n/a	chr1:85332191-85332206 chr1:85332191-85332202 chr1:85332191-85332202

Variant related genes	Relation type
LPAR3	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10493756	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs9324144	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9726937	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830448	chr1:85294094-85491110	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1325273	LOC339524	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85313000-85332800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:85313600-85357200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:85315600-85336400	Weak transcription	Right Ventricle	heart
4	chr1:85319400-85336400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:85320600-85354800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:85321000-85342800	Weak transcription	Right Atrium	heart
7	chr1:85321800-85332400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:85322800-85355800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:85324400-85342000	Weak transcription	Left Ventricle	heart
10	chr1:85326200-85335000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:85327400-85357400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:85328400-85332200	Strong transcription	NHEK	skin
13	chr1:85329000-85335800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:85329200-85345800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:85329600-85343400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:85330400-85332200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:85330400-85335400	Weak transcription	HMEC	breast
18	chr1:85330800-85333800	Weak transcription	Fetal Heart	heart
19	chr1:85331400-85347400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:85331600-85343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:85331600-85350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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