Variant report

Variant	rs9726937
Chromosome Location	chr1:85309074-85309075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10493756	1.00[YRI][hapmap]
rs1325273	1.00[YRI][hapmap]
rs9324144	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830448	chr1:85294094-85491110	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85289400-85330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:85296600-85312800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:85304000-85313200	Weak transcription	Gastric	stomach
4	chr1:85305800-85313000	Weak transcription	Left Ventricle	heart
5	chr1:85305800-85313000	Weak transcription	Pancreas	Pancrea
6	chr1:85306200-85316000	Enhancers	Fetal Heart	heart
7	chr1:85306600-85309800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:85307400-85309200	Flanking Active TSS	NHEK	skin
9	chr1:85307400-85309400	Enhancers	Stomach Smooth Muscle	stomach
10	chr1:85307400-85309600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:85307400-85310000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:85307600-85309400	Weak transcription	Esophagus	oesophagus
13	chr1:85307600-85309600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:85307800-85309600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:85307800-85311400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:85308000-85310200	Enhancers	Fetal Lung	lung
17	chr1:85308000-85312800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:85308600-85309200	Enhancers	Stomach Mucosa	stomach
19	chr1:85308600-85309400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:85308800-85309400	Enhancers	Fetal Thymus	thymus
21	chr1:85309000-85309400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:85309000-85310000	Enhancers	HMEC	breast
23	chr1:85309000-85310200	Enhancers	Fetal Stomach	stomach
24	chr1:85309000-85312000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:85309000-85312800	Weak transcription	Colon Smooth Muscle	Colon
26	chr1:85309000-85313000	Weak transcription	Right Atrium	heart
27	chr1:85309000-85313000	Weak transcription	Right Ventricle	heart

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