Variant report

Variant	rs13255425
Chromosome Location	chr8:10368593-10368594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10105841	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11787125	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12548144	0.81[ASN][1000 genomes]
rs12674796	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13254676	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13280674	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13280729	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13281562	0.82[ASN][1000 genomes]
rs28485845	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34037334	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35128500	0.85[AMR][1000 genomes]
rs35483889	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4240647	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4240648	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4268093	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4281086	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4289772	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4339601	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4398869	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4437611	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4457299	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4473997	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4496927	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4531010	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4535706	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4543507	0.84[ASN][1000 genomes]
rs56225449	0.88[ASN][1000 genomes]
rs62490637	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62490640	0.82[AMR][1000 genomes]
rs6601478	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6601481	0.82[EUR][1000 genomes]
rs6601483	0.82[EUR][1000 genomes]
rs7008169	0.90[AMR][1000 genomes]
rs7012813	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7357473	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7812525	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7821144	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7834351	0.90[ASN][1000 genomes]
rs7835667	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7838089	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7838337	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7839763	0.82[EUR][1000 genomes]
rs7846328	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1019090	chr8:10303099-10369061	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1024976	chr8:10303099-10385361	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1030856	chr8:10303099-10439064	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv610268	chr8:10331636-10486652	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	nsv1025251	chr8:10343591-10488557	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv1026918	chr8:10359634-10390452	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10356400-10368800	Weak transcription	Brain Germinal Matrix	brain
2	chr8:10367600-10368600	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr8:10367600-10368600	Active TSS	Rectal Smooth Muscle	rectum
4	chr8:10367600-10370200	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:10367800-10370000	Enhancers	Fetal Kidney	kidney
6	chr8:10368000-10369000	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:10368000-10369600	Enhancers	Fetal Stomach	stomach
8	chr8:10368000-10370600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:10368200-10368600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:10368200-10368800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:10368200-10368800	Enhancers	Duodenum Mucosa	Duodenum
12	chr8:10368200-10369000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr8:10368200-10369000	Enhancers	Fetal Lung	lung
14	chr8:10368200-10369200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:10368200-10369400	Enhancers	Colon Smooth Muscle	Colon
16	chr8:10368200-10370200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:10368400-10368600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:10368400-10368600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr8:10368400-10368600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr8:10368400-10368800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:10368400-10369200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:10368400-10369400	Enhancers	NHDF-Ad	bronchial
23	chr8:10368400-10369800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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