Variant report

Variant	rs13257317
Chromosome Location	chr8:42511174-42511175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10110377	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13270610	0.87[ASN][1000 genomes]
rs3927066	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42505400-42513800	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:42505400-42515800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:42505800-42514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:42505800-42514000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:42508200-42511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:42508600-42512800	Weak transcription	HepG2	liver
7	chr8:42509200-42515000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:42509600-42512200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:42509600-42512200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr8:42509600-42513200	Weak transcription	Fetal Heart	heart
11	chr8:42510200-42515200	Weak transcription	Left Ventricle	heart
12	chr8:42510400-42511400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:42510400-42511600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:42510400-42514000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr8:42510600-42511200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:42510600-42512000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:42511000-42511400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr8:42511000-42511800	Enhancers	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links