Variant report

Variant	rs13270610
Chromosome Location	chr8:42521401-42521402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10110377	0.89[ASN][1000 genomes]
rs13257317	0.87[ASN][1000 genomes]
rs13263434	0.91[ASN][1000 genomes]
rs28408880	0.82[ASN][1000 genomes]
rs3927066	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4954	0.82[ASN][1000 genomes]
rs7815800	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42517200-42521800	Weak transcription	Fetal Heart	heart
2	chr8:42520600-42522200	Enhancers	Dnd41	blood
3	chr8:42521000-42521600	Flanking Active TSS	GM12878-XiMat	blood
4	chr8:42521000-42521800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr8:42521000-42521800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr8:42521000-42522000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr8:42521000-42522000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:42521000-42522200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:42521000-42522200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr8:42521000-42522400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr8:42521200-42521800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr8:42521200-42522000	Enhancers	Primary B cells from peripheral blood	blood
13	chr8:42521200-42522000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:42521200-42522000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr8:42521400-42522000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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