Variant report

Variant	rs13258690
Chromosome Location	chr8:79029781-79029782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10095221	0.92[EUR][1000 genomes]
rs10099895	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258830	0.94[EUR][1000 genomes]
rs13272568	1.00[ASN][1000 genomes]
rs13274461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13281068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481513	0.98[ASN][1000 genomes]
rs17483138	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368503	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4308718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62510275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6473090	1.00[ASN][1000 genomes]
rs6989005	0.97[EUR][1000 genomes]
rs6991500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814012	1.00[ASN][1000 genomes]
rs957280	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526123	chr8:79008608-79046492	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv525612	chr8:79008608-79046695	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79027800-79030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:79027800-79030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:79027800-79031000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:79027800-79032400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:79027800-79032800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:79028000-79030600	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:79028000-79030600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:79028200-79031000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:79028800-79030000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:79029200-79032600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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