Variant report

Variant	rs6989005
Chromosome Location	chr8:79051078-79051079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10095221	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10099895	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11784050	0.97[EUR][1000 genomes]
rs13258690	0.97[EUR][1000 genomes]
rs13258830	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13274461	0.98[EUR][1000 genomes]
rs13278866	0.91[EUR][1000 genomes]
rs13281068	0.97[EUR][1000 genomes]
rs17483138	0.98[EUR][1000 genomes]
rs2368503	0.97[EUR][1000 genomes]
rs4308718	0.92[EUR][1000 genomes]
rs62510275	0.91[EUR][1000 genomes]
rs6991500	0.97[EUR][1000 genomes]
rs957280	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79046200-79051800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:79051000-79052200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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