Variant report

Variant	rs13259820
Chromosome Location	chr8:121803200-121803201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13269664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34072257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34255801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34385297	0.95[EUR][1000 genomes]
rs34473121	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34632392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35201684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35803869	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57849838	0.91[AFR][1000 genomes]
rs59370568	0.91[AFR][1000 genomes]
rs59536599	0.91[AFR][1000 genomes]
rs59760493	0.91[AFR][1000 genomes]
rs61168588	0.91[AFR][1000 genomes]
rs6993049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7011039	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71514722	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7463542	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2757289	chr8:121765701-121828919	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759640	chr8:121765701-121828919	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121795800-121805200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:121798600-121819400	Weak transcription	Fetal Stomach	stomach
3	chr8:121799000-121820800	Weak transcription	Aorta	Aorta
4	chr8:121799200-121805400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:121799200-121807600	Weak transcription	HSMM	muscle
6	chr8:121799200-121808400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:121799200-121808800	Weak transcription	Esophagus	oesophagus
8	chr8:121799200-121819600	Weak transcription	Lung	lung
9	chr8:121799400-121805200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:121799400-121810200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:121799400-121811200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:121799400-121820800	Weak transcription	Fetal Intestine Small	intestine
13	chr8:121800800-121805000	Weak transcription	HSMMtube	muscle
14	chr8:121801600-121820400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:121801800-121805000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:121802000-121805200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr8:121802000-121816400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:121802400-121803400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:121802400-121807800	Weak transcription	Liver	Liver
20	chr8:121802600-121809600	Weak transcription	Primary B cells from cord blood	blood
21	chr8:121802600-121814600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr8:121802800-121804800	Weak transcription	HepG2	liver
23	chr8:121802800-121813800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr8:121803200-121814600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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