Variant report

Variant	rs7463542
Chromosome Location	chr8:121781773-121781774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTBP-1	chr8:121780899-121781938	ENSG00000248318.1

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13259820	0.91[AFR][1000 genomes]
rs13269664	0.84[YRI][hapmap];0.88[AFR][1000 genomes]
rs34072257	0.91[AFR][1000 genomes]
rs34255801	0.91[AFR][1000 genomes]
rs34632392	0.91[AFR][1000 genomes]
rs35201684	0.91[AFR][1000 genomes]
rs35803869	0.88[AFR][1000 genomes]
rs57849838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59370568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59536599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59760493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61168588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6993049	0.91[YRI][hapmap];0.91[AFR][1000 genomes]
rs7010935	0.84[YRI][hapmap];0.91[AFR][1000 genomes]
rs7011039	0.91[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2757289	chr8:121765701-121828919	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759640	chr8:121765701-121828919	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121761200-121789400	Weak transcription	Fetal Kidney	kidney
2	chr8:121769200-121786400	Weak transcription	Placenta	Placenta
3	chr8:121769800-121788400	Weak transcription	Gastric	stomach
4	chr8:121770000-121786600	Weak transcription	Thymus	Thymus
5	chr8:121770200-121788800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:121770200-121797400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:121770200-121798600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:121771000-121782000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr8:121773400-121782200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:121774800-121781800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:121774800-121781800	Weak transcription	Pancreas	Pancrea
12	chr8:121774800-121786400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:121774800-121787800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:121774800-121788600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:121775000-121784400	Weak transcription	Fetal Stomach	stomach
16	chr8:121775000-121785000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:121775000-121786200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:121775000-121786400	Weak transcription	Psoas Muscle	Psoas
19	chr8:121775000-121787600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:121775200-121786600	Weak transcription	HSMM	muscle
21	chr8:121775200-121788800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:121775200-121797400	Weak transcription	Spleen	Spleen
23	chr8:121775400-121786400	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:121775600-121783600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:121776200-121789200	Weak transcription	Fetal Intestine Large	intestine
26	chr8:121776800-121782200	Weak transcription	NHDF-Ad	bronchial
27	chr8:121777000-121782400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:121777400-121796600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr8:121778000-121787800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:121778200-121797200	Weak transcription	Fetal Intestine Small	intestine
31	chr8:121779000-121784000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr8:121779200-121783400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr8:121779600-121781800	Weak transcription	Esophagus	oesophagus
34	chr8:121779800-121782400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:121780000-121782000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr8:121780000-121782600	Strong transcription	Liver	Liver
37	chr8:121780400-121782400	Strong transcription	HepG2	liver
38	chr8:121780800-121783200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr8:121781000-121786000	Weak transcription	Primary B cells from cord blood	blood
40	chr8:121781200-121786200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:121781400-121781800	Genic enhancers	Primary T cells from cord blood	blood
42	chr8:121781400-121784000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:121781400-121784800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr8:121781400-121785800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr8:121781400-121786600	Weak transcription	Lung	lung
46	chr8:121781600-121782000	Enhancers	Primary T cells fromperipheralblood	blood
47	chr8:121781600-121782000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:121781600-121782000	Strong transcription	Aorta	Aorta
49	chr8:121781600-121782000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr8:121781600-121782400	Genic enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links