Variant report
| Variant | rs13260533 |
|---|---|
| Chromosome Location | chr8:9690360-9690361 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11249961 | 1.00[ASN][1000 genomes] |
| rs11783922 | 0.87[ASN][1000 genomes] |
| rs12114434 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12114435 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12114977 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12540961 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12547274 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12548657 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12550323 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13251619 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1567837 | 0.80[ASN][1000 genomes] |
| rs17150534 | 0.86[ASN][1000 genomes] |
| rs17150543 | 0.85[ASN][1000 genomes] |
| rs2048653 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2048654 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2409618 | 0.80[EUR][1000 genomes] |
| rs4840447 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4840448 | 0.97[ASN][1000 genomes] |
| rs6980545 | 0.81[ASN][1000 genomes] |
| rs6984624 | 0.85[ASN][1000 genomes] |
| rs6984939 | 0.81[ASN][1000 genomes] |
| rs6988507 | 0.85[ASN][1000 genomes] |
| rs7002962 | 0.86[ASN][1000 genomes] |
| rs7018379 | 0.85[ASN][1000 genomes] |
| rs7814068 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7823438 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9657510 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530864 | chr8:9097498-9914548 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | esv16865 | chr8:9642195-9712807 | Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:9688200-9690400 | Enhancers | HepG2 | liver |
