Variant report

Variant	rs1326301
Chromosome Location	chr20:24542281-24542282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12480522	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1326298	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1575872	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17250061	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17250068	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1887057	1.00[JPT][hapmap]
rs2026565	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs4813521	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815282	1.00[JPT][hapmap]
rs6049791	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6049793	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6049794	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6114780	0.94[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs7268862	1.00[JPT][hapmap]
rs9753747	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24528800-24546400	Weak transcription	Aorta	Aorta
2	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24541000-24542400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:24541000-24543200	Enhancers	Brain Substantia Nigra	brain
5	chr20:24541200-24542400	Enhancers	Brain Cingulate Gyrus	brain
6	chr20:24541600-24542600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr20:24541600-24542600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr20:24541800-24542400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:24541800-24542400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr20:24541800-24542400	Enhancers	Left Ventricle	heart
11	chr20:24541800-24551600	Weak transcription	Fetal Brain Male	brain
12	chr20:24542000-24543600	Enhancers	Brain Hippocampus Middle	brain
13	chr20:24542200-24543400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr20:24542200-24543800	Weak transcription	Psoas Muscle	Psoas
15	chr20:24542200-24544600	Weak transcription	Brain Angular Gyrus	brain
16	chr20:24542200-24552400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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