Variant report

Variant	rs13266382
Chromosome Location	chr8:121052335-121052336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121048344..121050825-chr8:121050887..121053593,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10095303	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10109558	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10110144	0.83[AMR][1000 genomes]
rs1051534	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10955946	0.88[AMR][1000 genomes]
rs10955947	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10955951	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11787175	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11787250	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11986202	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11995866	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12680396	0.83[AMR][1000 genomes]
rs13272368	0.88[AMR][1000 genomes]
rs1356748	0.87[AMR][1000 genomes]
rs2056304	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2139434	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2326429	0.81[AMR][1000 genomes]
rs34476793	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4584180	0.81[AMR][1000 genomes]
rs4870970	0.84[AMR][1000 genomes]
rs4871719	0.87[AMR][1000 genomes]
rs4871821	0.83[AMR][1000 genomes]
rs4871822	0.83[AMR][1000 genomes]
rs4871827	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58564644	0.88[AMR][1000 genomes]
rs60657932	0.88[AMR][1000 genomes]
rs62528700	0.81[AMR][1000 genomes]
rs6469889	0.88[AMR][1000 genomes]
rs6980708	0.85[AFR][1000 genomes]
rs6997067	0.87[AMR][1000 genomes]
rs7817016	0.83[AFR][1000 genomes]
rs7833689	0.88[AMR][1000 genomes]
rs9642847	0.87[AMR][1000 genomes]
rs9643139	0.85[AMR][1000 genomes]
rs9643140	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121017000-121067000	Weak transcription	Brain Anterior Caudate	brain
2	chr8:121022400-121065400	Weak transcription	Left Ventricle	heart
3	chr8:121022800-121053000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:121032000-121058000	Weak transcription	Pancreas	Pancrea
5	chr8:121036000-121063800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:121038400-121061800	Weak transcription	Adipose Nuclei	Adipose
7	chr8:121042000-121063400	Weak transcription	Spleen	Spleen
8	chr8:121045000-121056600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:121045200-121053400	Weak transcription	Liver	Liver
10	chr8:121046200-121053000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:121046200-121053200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:121046200-121065200	Weak transcription	Psoas Muscle	Psoas
13	chr8:121046400-121056600	Weak transcription	Gastric	stomach
14	chr8:121046600-121052800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:121048400-121057800	Weak transcription	Fetal Intestine Small	intestine
16	chr8:121048600-121061800	Weak transcription	Fetal Intestine Large	intestine
17	chr8:121048600-121061800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:121048800-121052800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr8:121048800-121053000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:121048800-121053000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:121048800-121053000	Weak transcription	Stomach Mucosa	stomach
22	chr8:121048800-121053400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:121048800-121053600	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:121048800-121063600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr8:121048800-121063600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:121049000-121052800	Weak transcription	Brain Substantia Nigra	brain
27	chr8:121049000-121053000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:121049000-121053000	Weak transcription	Brain Angular Gyrus	brain
29	chr8:121049000-121053000	Weak transcription	Brain Hippocampus Middle	brain
30	chr8:121049000-121054000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:121049200-121062200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:121049200-121072800	Weak transcription	Fetal Lung	lung
33	chr8:121049200-121072800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr8:121049400-121053400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr8:121049600-121052400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:121049800-121059000	Weak transcription	Fetal Stomach	stomach
37	chr8:121050000-121052800	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:121050000-121053000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:121050000-121053600	Weak transcription	Ovary	ovary
40	chr8:121050200-121060200	Weak transcription	Fetal Kidney	kidney
41	chr8:121051000-121052600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:121051200-121054800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:121051600-121056600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr8:121051600-121056600	Weak transcription	Osteobl	bone
45	chr8:121052200-121052800	Enhancers	Fetal Muscle Trunk	muscle

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