Variant report

Variant	rs4584180
Chromosome Location	chr8:120998800-120998801
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10110144	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955946	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10955947	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11779963	0.88[ASN][1000 genomes]
rs11986202	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12680396	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13266382	0.81[AMR][1000 genomes]
rs13272368	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1356748	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2139434	0.82[AMR][1000 genomes]
rs2139435	0.89[ASN][1000 genomes]
rs2139436	0.89[ASN][1000 genomes]
rs2139437	0.81[ASN][1000 genomes]
rs2326429	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28650977	0.88[AMR][1000 genomes]
rs4053282	0.88[ASN][1000 genomes]
rs4398969	0.89[ASN][1000 genomes]
rs4870969	0.87[ASN][1000 genomes]
rs4870970	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871719	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4871819	0.87[ASN][1000 genomes]
rs4871821	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871822	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871823	0.85[ASN][1000 genomes]
rs4871824	0.88[ASN][1000 genomes]
rs58564644	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60657932	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62528700	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469889	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6469890	0.84[ASN][1000 genomes]
rs6997067	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7833689	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7836124	0.80[EUR][1000 genomes]
rs9642847	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9643139	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9643140	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv891419	chr8:120990455-121047798	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120978000-121013600	Weak transcription	Gastric	stomach
2	chr8:120986400-120999600	Weak transcription	Spleen	Spleen
3	chr8:120990800-121001600	Weak transcription	Ovary	ovary
4	chr8:120991000-120999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:120991200-121013400	Weak transcription	Fetal Stomach	stomach
6	chr8:120991400-121003000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:120995200-120999400	Weak transcription	Psoas Muscle	Psoas
8	chr8:120995200-121000000	Weak transcription	Left Ventricle	heart
9	chr8:120995400-121000000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:120995400-121002600	Weak transcription	Adipose Nuclei	Adipose
11	chr8:120995400-121002800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:120995600-120999600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:120995600-121038400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:120995800-120999600	Weak transcription	Esophagus	oesophagus
15	chr8:120995800-120999600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr8:120995800-121000000	Weak transcription	Lung	lung
17	chr8:120995800-121002800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:120995800-121002800	Weak transcription	Brain Angular Gyrus	brain
19	chr8:120995800-121003400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:120995800-121013800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:120996000-120999400	Weak transcription	Placenta	Placenta
22	chr8:120996000-121003200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr8:120996200-121001400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:120996400-120999400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:120996400-120999400	Weak transcription	Fetal Kidney	kidney
26	chr8:120996400-120999400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:120996400-120999600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:120996400-121000000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr8:120996400-121000200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:120996400-121001400	Weak transcription	Small Intestine	intestine
31	chr8:120996400-121001600	Weak transcription	Colon Smooth Muscle	Colon
32	chr8:120996400-121002600	Weak transcription	Brain Substantia Nigra	brain
33	chr8:120996400-121002600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr8:120996600-121000000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:120996600-121000200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr8:120996600-121001600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr8:120996800-120999400	Weak transcription	Stomach Mucosa	stomach
38	chr8:120996800-120999600	Weak transcription	Fetal Intestine Small	intestine
39	chr8:120996800-121003000	Weak transcription	Fetal Intestine Large	intestine

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