Variant report

Variant	rs4870969
Chromosome Location	chr8:121006548-121006549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10110144	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11986039	0.92[EUR][1000 genomes]
rs1356748	0.81[JPT][hapmap]
rs1401810	0.92[EUR][1000 genomes]
rs1401813	0.85[CHB][hapmap]
rs1543201	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs1879150	0.92[EUR][1000 genomes]
rs2037342	0.85[CHB][hapmap]
rs2037343	0.85[CHB][hapmap]
rs2037344	0.85[CHB][hapmap]
rs2139435	0.98[ASN][1000 genomes]
rs2139436	0.98[ASN][1000 genomes]
rs2139437	0.89[ASN][1000 genomes]
rs2139438	0.90[EUR][1000 genomes]
rs2139439	0.89[EUR][1000 genomes]
rs2176748	0.89[EUR][1000 genomes]
rs2176749	0.89[EUR][1000 genomes]
rs2271900	0.85[CHB][hapmap]
rs2326428	0.92[EUR][1000 genomes]
rs2326429	0.87[ASN][1000 genomes]
rs2326430	0.89[EUR][1000 genomes]
rs2326434	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs2875927	0.89[EUR][1000 genomes]
rs28885745	0.92[EUR][1000 genomes]
rs4053282	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4348544	0.84[CEU][hapmap]
rs4398969	0.98[ASN][1000 genomes]
rs4584180	0.87[ASN][1000 genomes]
rs4870970	0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4871030	0.82[ASN][1000 genomes]
rs4871031	0.94[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs4871032	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs4871819	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs4871821	0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4871822	0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4871823	0.94[ASN][1000 genomes]
rs4871824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs62528700	0.87[ASN][1000 genomes]
rs6469882	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6469888	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs6469889	0.81[JPT][hapmap]
rs6469890	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs6469891	0.88[EUR][1000 genomes]
rs6985424	0.83[CHB][hapmap]
rs7012522	0.86[EUR][1000 genomes]
rs7386139	0.94[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs7387672	0.94[CEU][hapmap];0.81[CHB][hapmap];0.91[EUR][1000 genomes]
rs7813264	0.89[EUR][1000 genomes]
rs7817075	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7821583	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs7821842	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes]
rs7822000	0.89[EUR][1000 genomes]
rs7822384	0.89[CEU][hapmap];0.80[CHB][hapmap]
rs7829279	0.91[EUR][1000 genomes]
rs7832657	0.89[EUR][1000 genomes]
rs7833689	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs7836786	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7845541	0.84[CEU][hapmap]
rs7846263	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs9297609	0.81[CHB][hapmap]
rs9643139	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv891419	chr8:120990455-121047798	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120978000-121013600	Weak transcription	Gastric	stomach
2	chr8:120991200-121013400	Weak transcription	Fetal Stomach	stomach
3	chr8:120995600-121038400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:120995800-121013800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:121000600-121019600	Weak transcription	Left Ventricle	heart
6	chr8:121001800-121015600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr8:121001800-121021200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:121003200-121006600	Enhancers	Rectal Smooth Muscle	rectum
9	chr8:121003200-121015200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:121003200-121015200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:121003600-121013400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:121003600-121013400	Weak transcription	Fetal Intestine Small	intestine
13	chr8:121003600-121013600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:121003600-121015200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:121003800-121007000	Enhancers	Colon Smooth Muscle	Colon
16	chr8:121003800-121013400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:121003800-121014800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:121003800-121015200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr8:121004000-121013800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:121004000-121017600	Weak transcription	Right Atrium	heart
21	chr8:121004000-121048000	Weak transcription	Stomach Mucosa	stomach
22	chr8:121004600-121013400	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:121004600-121013600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:121004600-121015200	Weak transcription	Brain Anterior Caudate	brain
25	chr8:121004600-121041400	Weak transcription	Brain Angular Gyrus	brain
26	chr8:121004800-121017400	Weak transcription	Fetal Kidney	kidney
27	chr8:121005000-121013600	Weak transcription	Ovary	ovary
28	chr8:121005200-121011400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:121005200-121012400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:121005200-121015200	Weak transcription	Spleen	Spleen
31	chr8:121005200-121045800	Weak transcription	Psoas Muscle	Psoas
32	chr8:121005600-121012200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:121005600-121015600	Weak transcription	Adipose Nuclei	Adipose
34	chr8:121005800-121011800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:121005800-121015000	Weak transcription	Brain Substantia Nigra	brain
36	chr8:121006000-121013800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:121006000-121013800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:121006400-121007000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr8:121006400-121015200	Weak transcription	Brain Hippocampus Middle	brain

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