Variant report

Variant	rs13268191
Chromosome Location	chr8:125775507-125775508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13270557	0.84[EUR][1000 genomes]
rs4870926	0.81[EUR][1000 genomes]
rs4871536	0.83[EUR][1000 genomes]
rs4871537	0.83[EUR][1000 genomes]
rs4871538	0.83[EUR][1000 genomes]
rs7843472	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125773200-125778800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:125773800-125778600	Weak transcription	Fetal Intestine Large	intestine
3	chr8:125774200-125778600	Weak transcription	Fetal Intestine Small	intestine
4	chr8:125774200-125795800	Weak transcription	Pancreas	Pancrea
5	chr8:125775000-125778600	Weak transcription	HepG2	liver
6	chr8:125775200-125777000	Weak transcription	NHDF-Ad	bronchial
7	chr8:125775200-125777600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:125775400-125777200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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