Variant report

Variant	rs4870926
Chromosome Location	chr8:125769156-125769157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13268191	0.81[EUR][1000 genomes]
rs13270557	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35999233	0.81[ASN][1000 genomes]
rs4871534	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs4871536	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4871537	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4871538	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470271	0.86[JPT][hapmap]
rs6986404	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs7823383	0.85[ASN][1000 genomes]
rs7833381	0.87[ASN][1000 genomes]
rs7833511	0.87[ASN][1000 genomes]
rs7841287	0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[ASN][1000 genomes]
rs7843472	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125761600-125772200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:125764800-125769400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:125764800-125773600	Weak transcription	NHDF-Ad	bronchial
4	chr8:125765000-125773600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:125765200-125769200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:125766600-125769600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:125767600-125769800	Weak transcription	HSMM	muscle
8	chr8:125767600-125772400	Weak transcription	Osteobl	bone
9	chr8:125767600-125772600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:125767800-125770000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:125767800-125770000	Weak transcription	HSMMtube	muscle
12	chr8:125767800-125770400	Weak transcription	Psoas Muscle	Psoas
13	chr8:125767800-125770800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:125767800-125772000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:125767800-125772400	Weak transcription	Fetal Heart	heart
16	chr8:125767800-125772600	Weak transcription	Pancreas	Pancrea
17	chr8:125768800-125769200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:125769000-125769400	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links