Variant report

Variant	rs13269351
Chromosome Location	chr8:68228120-68228121
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68226101..68228304-chr8:68255635..68257151,2	K562	blood:

Variant related genes	Relation type
ENSG00000271966	Chromatin interaction
ENSG00000066777	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13276024	1.00[AFR][1000 genomes]
rs13278242	1.00[AFR][1000 genomes]
rs35775645	1.00[AFR][1000 genomes]
rs71515060	1.00[AFR][1000 genomes]
rs71515062	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71517404	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13269351	UTS2	trans	lymphoblastoid	seeQTL
rs13269351	ANKRD24	trans	lymphoblastoid	seeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68162400-68231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:68173600-68236400	Weak transcription	Stomach Mucosa	stomach
3	chr8:68197800-68234200	Weak transcription	Aorta	Aorta
4	chr8:68209600-68252400	Weak transcription	Fetal Kidney	kidney
5	chr8:68211600-68240800	Weak transcription	Fetal Brain Male	brain
6	chr8:68212200-68229000	Weak transcription	HepG2	liver
7	chr8:68212400-68228200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:68212800-68252400	Weak transcription	Hela-S3	cervix
9	chr8:68213200-68229000	Weak transcription	Small Intestine	intestine
10	chr8:68214000-68228200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:68214000-68234600	Weak transcription	HMEC	breast
12	chr8:68214400-68228600	Weak transcription	Ovary	ovary
13	chr8:68218800-68254200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:68220200-68229000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:68220200-68251600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:68220200-68251800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:68220400-68228800	Weak transcription	NH-A	brain
18	chr8:68220400-68251400	Weak transcription	NHDF-Ad	bronchial
19	chr8:68220400-68251800	Weak transcription	NHLF	lung
20	chr8:68220600-68236400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr8:68220800-68228400	Weak transcription	Brain Anterior Caudate	brain
22	chr8:68220800-68228800	Weak transcription	Osteobl	bone
23	chr8:68221800-68229000	Weak transcription	HSMMtube	muscle
24	chr8:68224600-68251800	Weak transcription	HUVEC	blood vessel
25	chr8:68225600-68230000	Enhancers	Colon Smooth Muscle	Colon
26	chr8:68225600-68250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr8:68225600-68251600	Weak transcription	Fetal Brain Female	brain
28	chr8:68225800-68228800	Weak transcription	HSMM	muscle
29	chr8:68226000-68229200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:68226000-68236400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:68226200-68229000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr8:68226200-68229200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr8:68226200-68236200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:68226200-68236600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr8:68226400-68228800	Weak transcription	Left Ventricle	heart
36	chr8:68226400-68228800	Weak transcription	Right Atrium	heart
37	chr8:68226400-68228800	Weak transcription	Right Ventricle	heart
38	chr8:68226400-68229000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr8:68226400-68229200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:68226400-68229400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr8:68226400-68231600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr8:68226400-68236400	Weak transcription	Adipose Nuclei	Adipose
43	chr8:68226400-68236400	Weak transcription	Brain Substantia Nigra	brain
44	chr8:68226400-68236400	Weak transcription	Gastric	stomach
45	chr8:68226400-68236600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:68226400-68236600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr8:68226400-68238000	Weak transcription	GM12878-XiMat	blood
48	chr8:68226400-68238600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr8:68226400-68238800	Weak transcription	Spleen	Spleen
50	chr8:68226400-68248800	Weak transcription	Fetal Lung	lung

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