Variant report

Variant	rs13276024
Chromosome Location	chr8:68008815-68008816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:68006861..68009461-chr8:68010974..68012762,2	K562	blood:
2	chr8:67975625..67978171-chr8:68007327..68009716,2	MCF-7	breast:
3	chr8:67831901..67834274-chr8:68007659..68009308,2	K562	blood:

Variant related genes	Relation type
ENSG00000121022	Chromatin interaction
ENSG00000104218	Chromatin interaction
ENSG00000252637	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13269351	1.00[AFR][1000 genomes]
rs13278242	1.00[AFR][1000 genomes]
rs13278863	1.00[AFR][1000 genomes]
rs35775645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71515060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71515062	1.00[AFR][1000 genomes]
rs71517404	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv890975	chr8:67983796-68032058	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611458	chr8:67986890-68016482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv611459	chr8:67995266-68015219	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1795021	chr8:67995266-68068812	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv1846804	chr8:67995266-68074422	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1802127	chr8:67995266-68076723	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67977800-68009200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:67977800-68010000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:67977800-68013800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr8:67977800-68021800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:67977800-68044000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr8:67978000-68012200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:67978200-68012600	Weak transcription	HUVEC	blood vessel
8	chr8:67978200-68074400	Weak transcription	Esophagus	oesophagus
9	chr8:67978400-68044800	Weak transcription	Brain Angular Gyrus	brain
10	chr8:67978400-68045600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:67978600-68031200	Weak transcription	Fetal Heart	heart
12	chr8:67978600-68074200	Weak transcription	Psoas Muscle	Psoas
13	chr8:67978800-68044200	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:67979400-68013200	Weak transcription	Pancreas	Pancrea
15	chr8:67984200-68009200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:67986400-68045400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:67988200-68014000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:67988200-68038800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr8:67988200-68074800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr8:67988400-68035000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:67990400-68074400	Weak transcription	Spleen	Spleen
22	chr8:67990800-68009600	Weak transcription	Small Intestine	intestine
23	chr8:67991000-68021400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:67991200-68011400	Weak transcription	Fetal Intestine Small	intestine
25	chr8:67991200-68035000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:67991800-68036800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:67993200-68044200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:67993400-68020800	Weak transcription	Lung	lung
29	chr8:67993400-68020800	Weak transcription	HSMMtube	muscle
30	chr8:67993400-68027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:67993400-68044000	Weak transcription	Ovary	ovary
32	chr8:67993400-68085000	Weak transcription	Aorta	Aorta
33	chr8:67994200-68044200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr8:67997000-68036800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:67999800-68031000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr8:68000400-68022600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:68000400-68031600	Weak transcription	Fetal Brain Female	brain
38	chr8:68000400-68035000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:68000400-68037600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr8:68002000-68009000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:68003800-68038600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr8:68004600-68021000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr8:68004800-68024400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr8:68005400-68011400	Weak transcription	Fetal Intestine Large	intestine
45	chr8:68005400-68038800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr8:68005800-68011400	Weak transcription	NHEK	skin
47	chr8:68005800-68020400	Weak transcription	HSMM	muscle
48	chr8:68005800-68031200	Weak transcription	Hela-S3	cervix
49	chr8:68005800-68044400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:68006200-68009200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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