Variant report

Variant	rs13270693
Chromosome Location	chr8:87726182-87726183
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13249824	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs13251005	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs13257284	0.91[CEU][hapmap]
rs13257881	0.91[CEU][hapmap]
rs13258166	0.92[CEU][hapmap]
rs13263948	0.92[CEU][hapmap]
rs13270200	0.85[EUR][1000 genomes]
rs13270456	0.81[EUR][1000 genomes]
rs13271141	0.92[CEU][hapmap]
rs13272455	0.91[CEU][hapmap]
rs13275755	0.85[EUR][1000 genomes]
rs13280483	0.85[EUR][1000 genomes]
rs13282813	0.91[CEU][hapmap]
rs1561688	0.92[CEU][hapmap]
rs1561690	0.91[CEU][hapmap]
rs16917022	0.85[YRI][hapmap]
rs28711500	0.82[AMR][1000 genomes]
rs35049127	0.85[EUR][1000 genomes]
rs35066672	0.85[EUR][1000 genomes]
rs7004687	0.80[YRI][hapmap]
rs7832818	0.87[CEU][hapmap]
rs7841121	0.85[YRI][hapmap]
rs971147	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87720000-87726600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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