Variant report

Variant	rs7832818
Chromosome Location	chr8:87697647-87697648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13249824	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13251005	0.95[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13256968	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257284	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13257881	0.95[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs13258166	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs13263948	0.96[CEU][hapmap];0.85[CHB][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13268968	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13270200	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13270456	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13270693	0.87[CEU][hapmap]
rs13271141	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13272455	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs13275755	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13280483	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13282813	1.00[ASW][hapmap];0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1561688	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs1561689	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1561690	0.95[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35049127	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35066672	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs971147	0.91[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87697400-87698000	Enhancers	Colon Smooth Muscle	Colon

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