Variant report

Variant	rs13271545
Chromosome Location	chr8:69148808-69148809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PREX2-2	chr8:69146910-69149265	NONHSAT127091

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1058194	0.84[EUR][1000 genomes]
rs10957423	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10957424	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10957425	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12541905	0.84[EUR][1000 genomes]
rs12544661	0.84[EUR][1000 genomes]
rs12546271	0.84[EUR][1000 genomes]
rs12547567	0.84[EUR][1000 genomes]
rs12547594	0.84[EUR][1000 genomes]
rs12548558	0.84[EUR][1000 genomes]
rs12549883	0.83[EUR][1000 genomes]
rs12549980	0.83[EUR][1000 genomes]
rs12549988	0.83[EUR][1000 genomes]
rs12681348	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257592	0.84[EUR][1000 genomes]
rs13258486	0.84[EUR][1000 genomes]
rs13262547	0.82[EUR][1000 genomes]
rs13271692	0.83[EUR][1000 genomes]
rs13272579	0.84[EUR][1000 genomes]
rs13281136	0.83[EUR][1000 genomes]
rs13282050	0.84[EUR][1000 genomes]
rs1404600	0.84[EUR][1000 genomes]
rs1404601	0.84[EUR][1000 genomes]
rs1525054	0.84[EUR][1000 genomes]
rs1525055	0.84[EUR][1000 genomes]
rs1525056	0.84[EUR][1000 genomes]
rs16934405	0.82[EUR][1000 genomes]
rs17450699	0.81[CHB][hapmap]
rs1880538	0.84[EUR][1000 genomes]
rs1917544	0.84[EUR][1000 genomes]
rs2280636	0.83[EUR][1000 genomes]
rs2280637	0.83[EUR][1000 genomes]
rs2280638	0.84[EUR][1000 genomes]
rs2280639	0.84[EUR][1000 genomes]
rs2280640	0.84[EUR][1000 genomes]
rs2280641	0.84[EUR][1000 genomes]
rs35741702	0.84[EUR][1000 genomes]
rs6472391	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6472392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6984731	0.84[EUR][1000 genomes]
rs7004629	0.84[EUR][1000 genomes]
rs7005736	0.83[EUR][1000 genomes]
rs7014680	0.84[JPT][hapmap]
rs7819467	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7824298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs940664	0.83[EUR][1000 genomes]
rs940665	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv890976	chr8:69100070-69155563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69130000-69151800	Weak transcription	Lung	lung
2	chr8:69131000-69151200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:69133000-69151800	Weak transcription	Left Ventricle	heart
4	chr8:69142000-69151400	Weak transcription	Aorta	Aorta
5	chr8:69142600-69153400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:69143000-69149400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:69143200-69155600	Weak transcription	Adipose Nuclei	Adipose
8	chr8:69143400-69149400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:69143600-69156000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:69146000-69155800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:69148200-69149800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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