Variant report

Variant	rs7014680
Chromosome Location	chr8:69125469-69125470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11989932	0.95[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs13271545	0.84[JPT][hapmap]
rs4737254	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs73265339	0.92[ASN][1000 genomes]
rs73265346	0.85[ASN][1000 genomes]
rs7827892	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv890976	chr8:69100070-69155563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69075000-69130800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:69086000-69141600	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:69090400-69126800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:69103200-69141400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:69103200-69141800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:69104800-69132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:69105400-69141400	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:69106400-69129800	Weak transcription	Adipose Nuclei	Adipose
9	chr8:69109600-69129800	Weak transcription	Left Ventricle	heart
10	chr8:69114000-69127000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:69115400-69129600	Weak transcription	Fetal Stomach	stomach
12	chr8:69115600-69126800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:69116200-69126400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:69116800-69126600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:69116800-69135000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:69120600-69140000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:69121600-69127200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:69122200-69138400	Weak transcription	Fetal Lung	lung
19	chr8:69122800-69126800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:69123000-69126800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:69123000-69126800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:69123000-69130000	Weak transcription	HUVEC	blood vessel
23	chr8:69123600-69128800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:69124000-69132800	Weak transcription	Pancreas	Pancrea
25	chr8:69125200-69127600	Enhancers	Fetal Brain Male	brain

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