Variant report

Variant	rs13272107
Chromosome Location	chr8:63820462-63820463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1017669	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10808726	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs10957249	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs12541223	0.88[EUR][1000 genomes]
rs12679775	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12680795	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13253399	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13255612	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13257884	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13280971	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1471042	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16929838	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16929875	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16929884	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28506994	0.93[EUR][1000 genomes]
rs34597813	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35567972	0.87[ASN][1000 genomes]
rs35814161	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4596652	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55919106	0.90[EUR][1000 genomes]
rs56266890	0.85[EUR][1000 genomes]
rs58073364	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7000612	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71527110	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7828305	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7831888	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs979263	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63820000-63821000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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