Variant report

Variant	rs55919106
Chromosome Location	chr8:63783141-63783142
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1017669	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10808726	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10957249	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12541223	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13253399	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13255612	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13257884	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13272107	0.90[EUR][1000 genomes]
rs13280971	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16929838	0.81[EUR][1000 genomes]
rs28506994	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34597813	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4596652	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56266890	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7000612	0.82[EUR][1000 genomes]
rs7831888	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs979263	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3376189	chr8:63781948-63784421	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3439081	chr8:63782023-63784571	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3403225	chr8:63782398-63783946	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3481411	chr8:63782656-63783418	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3529892	chr8:63782684-63783411	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3529891	chr8:63782719-63783358	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3529893	chr8:63782719-63783358	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3345005	chr8:63782758-63783448	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3481412	chr8:63782793-63783307	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63782000-63792200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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